Dating reservoir formation in virologically suppressed people living with HIV-1 in Rakai, Uganda. Kankaka, Edward; Redd, Andrew; Khan, Amjad; Reynolds, Steven; Saraf, Sharada; Kirby, Charles; Lynch, Briana; Hackman, Jada; Tomusange, Stephen; Kityamuweesi, Taddeo; Jamiru, Samiri; Anok, Aggrey; Buule, Paul; Daniel, Bruno; Martens, Craig; Chang, Larry; Quinn, Thomas C.; Prodger, Jessica; Poon, Art. Submitted, 2023.

Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents. Haley Sanderson, Kristen L. Gray, Alexander Manuele, Finlay Maguire, Amjad Khan ... Robert G. Beiko. Microbial Genomics, 2022.

Evolution along the parasitism-mutualism continuum determines the genetic repertoire of prophages. Amjad Khan, Alita R. Burmeister, Lindi M. Wahl. PLoS Computational Biology, 2020.

Quantifying the forces that maintain prophages in bacterial genomes. Amjad Khan, Lindi M. Wahl. Theoretical Population Biology, 2020.

Phage therapy and antibiotics for biofilm eradication: a predictive model. Amjad Khan, Lindi M. Wahl, Pei Yu. Recent Advances in Mathematical and Statistical Methods, AMMCS 2017.

Long-time stability of small FPU solitary waves. Amjad Khan, Dmitry Pelinovsky. Discrete & Continuous Dynamical Systems, 2017.

The mathematics of the lurker genes in the bacterial genome. Amjad Khan. July 14, 2022, Rose-Hulman Institute of Technology-Terre Haute, IN, USA.

A data-driven mathematical model to explore the evolutionary dynamics of conjugative transposons. Amjad Khan and Robert G Beiko. Workshop in Mathematical and Computational Biology Online, from 9th June 2022 to 10th June 2022.

Evolutionary dynamics of Tn916 family of Integrative Conjugative Elements (ICEs). Amjad Khan and Robert G Beiko. Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE) all hands meeting May 17 - May 19 2022, Dalhousie University, Halifax, NS, Canada.

The role of temperate bacteriophages in the maintenance and distribution of Antibiotic Resistance Genes (ARGs). Amjad Khan, Lindi M. Wahl and Robert G Beiko. Canadian Society of Applied and Industrial Mathematics (CAIMS 2021) June 21- 24, 2021 Virtual (hosted by the University of Waterloo, Waterloo, ON, Canada).

Modeling the transmission and loss of an important class of mobile genetic elements. Amjad Khan, Robert G Beiko. Virtual annual Meeting and Conference of the Society for Mathematical Biology SMB 2021 June 13 -17.

Systems modeling in the pharmaceutical industry - problem solving workshop. Amjad Khan. The Fields Institute, Toronto, ON, Canada, 2019.

The evolutionary forces acting on prophages: a mathematical study. Amjad Khan, Lindi M. Wahl. Annual Meeting and Conference of the Society for Mathematical Biology SMB 2019 Annual Meeting at Montral, Qubec, Canada.

Mathematical study of antibiotic and phage therapies in bacterial biofilm colonies. Workshop on the Role of Mathematics in Combatting Antibiotic Resistance and Developing Novel Antibacterials. Amjad Khan, Lindi M. Wahl. The Fields Institute, Toronto, ON, Canada, 2018.

Mathematical model of the prophage size distribution in bacterial genomes. Amjad Khan, Lindi M. Wahl. Canadian Society of Applied and Industrial Mathematics (CAIMS 2018), Ryerson University, Toronto, Canada, 2019.

Population dynamics of phages and biofilm bacteria. Amjad Khan, Lindi M. Wahl. The IV AMMCS International Conference, Waterloo, Ontario, Canada, 2017.

Approximations of the lattice dynamics. Amjad Khan, Dmitry Pelinovsky. McMaster University, Hamilton, Ontario, Canada, 2017.