Dating reservoir formation in virologically suppressed people living with HIV-1 in Rakai, Uganda. Edward Nelson Kankaka, Andrew D. Redd, Amjad Khan, Steven J. Reynolds, Sharada Saraf, Charles Kirby, Briana Lynch, Jada Hackman, Stephen Tomusange, Taddeo Kityamuweesi, Samiri Jamiru, Aggrey Anok, Paul Buule, Daniel Bruno, Craig Martens, Larry W. Chang, Thomas C. Quinn, Jessica L. Prodger, and Art Poon Virus Evolution, Volume 9, Issue 2 2023, vead046, https://doi.org/10.1093/ve/vead046.

Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents. Haley Sanderson​, Kristen L. Gray​, Alexander Manuele​, Finlay Maguire, Amjad Khan , Chaoyue Liu3​, Chandana Navanekere Rudrappa, John H. E. Nash, James Robertson​, Kyrylo Bessonov​, Martins Oloni​, Brian P. Alcock8​, Amogelang R. Raphenya, Tim A. McAllister, Sharon J. Peacock​, Kathy E. Raven, Theodore Gouliouris​, Andrew G. McArthur​, Fiona S. L. Brinkman​, Ryan C. Fink, Rahat Zaheer and Robert G. Beiko. Microbial Genomics, 2022.

Evolution along the parasitism-mutualism continuum determines the genetic repertoire of prophages. Amjad Khan, Alita R. Burmeister, Lindi M. Wahl. PLoS Computational Biology, 2020.

Quantifying the forces that maintain prophages in bacterial genomes. Amjad Khan, Lindi M. Wahl. Theoretical Population Biology, 2020.

Phage therapy and antibiotics for biofilm eradication: a predictive model. Amjad Khan, Lindi M. Wahl, Pei Yu. Recent Advances in Mathematical and Statistical Methods, AMMCS 2017.

Long-time stability of small FPU solitary waves. Amjad Khan, Dmitry Pelinovsky. Discrete & Continuous Dynamical Systems, 2017.

Mathematical Modeling of the Impact of Reverse Transcription Errors and Clonal Expansion on the HIV Latent Reservoir. Amjad Khan. Jun 19 – 22, 2024 , 31st International Dynamics & Evolution of Human Viruses, Squamish, BC, Canada.

Exploring the world of proviruses using Bioinformatics, mathematical modelling and simulations. Amjad Khan. May 29, 2024 , Western bioinformatics research seminar series, London, ON, Canada.

Battle Within: Evolutionary Dynamics of HIV With and Without Treatment. Amjad Khan. April 19 – 22, 2023 , 30th International Dynamics & Evolution of Human Viruses, German Cancer Research Center (DKFZ), Heidelberg, Germany.

Evolutionary dynamics of viral genomes that lurk in the prey genome: bioinformatics, modelling and simulation. Amjad Khan. April 14, 2023, University of Alberta, 4901 - 46 Avenue, Camrose, Alberta, Canada T4V 2R3.

The mathematics of the lurker genes in the bacterial genome. Amjad Khan. July 14, 2022, Rose-Hulman Institute of Technology-Terre Haute, IN, USA.

A data-driven mathematical model to explore the evolutionary dynamics of conjugative transposons. Amjad Khan and Robert G Beiko. Workshop in Mathematical and Computational Biology Online, from 9th June 2022 to 10th June 2022.

Evolutionary dynamics of Tn916 family of Integrative Conjugative Elements (ICEs). Amjad Khan and Robert G Beiko. Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE) all hands meeting May 17 - May 19 2022, Dalhousie University, Halifax, NS, Canada.

The role of temperate bacteriophages in the maintenance and distribution of Antibiotic Resistance Genes (ARGs). Amjad Khan, Lindi M. Wahl and Robert G Beiko. Canadian Society of Applied and Industrial Mathematics (CAIMS 2021) June 21- 24, 2021 Virtual (hosted by the University of Waterloo, Waterloo, ON, Canada).

Modeling the transmission and loss of an important class of mobile genetic elements. Amjad Khan, Robert G Beiko. Virtual annual Meeting and Conference of the Society for Mathematical Biology SMB 2021 June 13 -17.

Systems modeling in the pharmaceutical industry - problem solving workshop. Amjad Khan. The Fields Institute, Toronto, ON, Canada, 2019.

The evolutionary forces acting on prophages: a mathematical study. Amjad Khan, Lindi M. Wahl. Annual Meeting and Conference of the Society for Mathematical Biology SMB 2019 Annual Meeting at Montral, Qubec, Canada.

Mathematical study of antibiotic and phage therapies in bacterial biofilm colonies. Workshop on the Role of Mathematics in Combatting Antibiotic Resistance and Developing Novel Antibacterials. Amjad Khan, Lindi M. Wahl. The Fields Institute, Toronto, ON, Canada, 2018.

Mathematical model of the prophage size distribution in bacterial genomes. Amjad Khan, Lindi M. Wahl. Canadian Society of Applied and Industrial Mathematics (CAIMS 2018), Ryerson University, Toronto, Canada, 2019.

Population dynamics of phages and biofilm bacteria. Amjad Khan, Lindi M. Wahl. The IV AMMCS International Conference, Waterloo, Ontario, Canada, 2017.

Approximations of the lattice dynamics. Amjad Khan, Dmitry Pelinovsky. McMaster University, Hamilton, Ontario, Canada, 2017.